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SRX2924191: RNA-seq of Pseudoalteromonas tetraodonis: marine environment
1 ILLUMINA (Illumina HiSeq 2000) run: 5.8M spots, 1.2G bases, 419.9Mb downloads

Design: 1. total RNA 2. RNA fragment 3. removal of rRNA, fragmentation, cDNA synthesis and PCR amplification
Submitted by: Shandong University
Study: Pseudoalteromonas tetraodonis Transcriptome or Gene expression
show Abstracthide Abstract
chitin is a typical component of the exoskeleton of shellfish. It has been reported that Pseudoalteromonas strains can produce chitinases, implying that they have the ability to degrade chitin, respectively. Whole genome sequencing of multiple species in Pseudoalteromonas have been carried out in our group. In this thesis, we performed a research on the utilization of alginate and chitin by different species in this genus by using comparative genomic analyses and experimental verification.
Sample: Microbe sample from Pseudoalteromonas tetraodonis
SAMN07211334 • SRS2289783 • All experiments • All runs
Library:
Name: Ptet_NAG_3
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 5.8M spots, 1.2G bases, 419.9Mb
Run# of Spots# of BasesSizePublished
SRR56902455,799,1791.2G419.9Mb2018-06-28

ID:
4177953

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